Tertiary Analysis

Perform population-scale statistical analyses of genetic variants.

• Parallelizing Command-Line Bioinformatics Tools With the Pipe Transformer
  • Usage
  • Integrating with bioinformatics tools
  • Options
  • Cleanup
• Using Python Statistics Libraries
  • pandas example notebook
• Genome-wide Association Study Regression Tests
  • Linear regression
  • Logistic regression
• GloWGR: Whole Genome Regression
  • Performance
  • Overview
  • Data preparation
  • Stage 1. Genotype matrix blocking
  • Stage 2. Dimensionality reduction
  • Stage 3. Estimate phenotypic predictors
  • Proceed to GWAS
  • Troubleshooting